PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019172013.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 448aa MW: 52230.6 Da PI: 8.1737

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019172013.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33.9	1e-10	3	60	30	91
FAR1 30 krtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++ f Csk g+++++ k+ ++ rtgC a ++ +++++g w v+k e+ HnHel+p XP_019172013.1 3 TKMFHCSKDGFKRSTGKR----CYSKIDGRTGCGAYVQFNLHENGMWIVSKHEKLHNHELVP 60 678********98877....889999******************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MKTKMFHCSK DGFKRSTGKR CYSKIDGRTG CGAYVQFNLH ENGMWIVSKH EKLHNHELVP 60 PSKSYLLRSH RMVSRNHISY LTDLKSSGVS VADGVRFLKT QSGGSPLVGF TSRDAYNSLC 120 TDALNRLDGT DSNTLIEIFK QRQSSERDFY FDFEVDLESR LCSFFWRDGR MRRDYDLFGD 180 LLVHDTTYRT NKYDMICGPF VGMNHHCMNV MFGCGFLMNE KIESFVWLFK TFLRSMDYKS 240 PQSIMTDQCA AMAAAIVQVF PSSRHRLCIW HIGENSKKHI KGLRNQKDFL DIFNCLLKYI 300 DTEAEFEFYW TRMVTTYKCH NNHWIEKLYG CREKWCPAFN KDYFSGGILS SQRSETTNHS 360 ISRRLSKTSG LCDFYNSFVG VISEWRSREN GEDVRCSQGV PTMVMDNVKI LLHAREIYTI 420 EIYYLFEEQF LKGGSCYQEC VMLEDGVY

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MKTKMFHCSK DGFKRSTGKR CYSKIDGRTG CGAYVQFNLH ENGMWIVSKH EKLHNHELVP  60
PSKSYLLRSH RMVSRNHISY LTDLKSSGVS VADGVRFLKT QSGGSPLVGF TSRDAYNSLC  120
TDALNRLDGT DSNTLIEIFK QRQSSERDFY FDFEVDLESR LCSFFWRDGR MRRDYDLFGD  180
LLVHDTTYRT NKYDMICGPF VGMNHHCMNV MFGCGFLMNE KIESFVWLFK TFLRSMDYKS  240
PQSIMTDQCA AMAAAIVQVF PSSRHRLCIW HIGENSKKHI KGLRNQKDFL DIFNCLLKYI  300
DTEAEFEFYW TRMVTTYKCH NNHWIEKLYG CREKWCPAFN KDYFSGGILS SQRSETTNHS  360
ISRRLSKTSG LCDFYNSFVG VISEWRSREN GEDVRCSQGV PTMVMDNVKI LLHAREIYTI  420
EIYYLFEEQF LKGGSCYQEC VMLEDGVY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-71	FAR1 family protein