PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019172034.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SRS

Protein Properties

Length: 373aa MW: 39309.1 Da PI: 7.4681

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019172034.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	215.5	1.2e-66	134	289	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsstklss 93 ++sCqdCGnqakkdC+h+RCRtCC+srgf+C+thvkstWvpa+krrerq++l+a+++++++++ +++++kr+r++ + +s++ + XP_019172034.1 134 AGISCQDCGNQAKKDCSHMRCRTCCRSRGFQCQTHVKSTWVPASKRRERQHHLSALNQQQEQQQslqlhSRETPKRQRDDDNPPTSSSLLCSHRL 228 6789*************************************************9999888877888777777788877554444444444444 PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ + le+ ++P++vs +a f+cvr++svdd+e+++aYqtav+igGhvfkGiLyd+G+e+ XP_019172034.1 229 PSTISGLEMGNFPAKVSLNAAFQCVRMRSVDDSEDQYAYQTAVNIGGHVFKGILYDEGPES 289 55567789999**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MAGFFSLGGG SGGRGGGGGG GGGNTPHHPH HHHHQQNSSN AAATEISPES WFLYRNDQEI 60 PAAYKGFELW QEHQPHPHLN SLQELYPSSA VGLGVGPSSR NPHMSPSSPA AADEPLRSAA 120 FVMMRSAAAG TGAAGISCQD CGNQAKKDCS HMRCRTCCRS RGFQCQTHVK STWVPASKRR 180 ERQHHLSALN QQQEQQQSLQ LHSRETPKRQ RDDDNPPTSS SLLCSHRLPS TISGLEMGNF 240 PAKVSLNAAF QCVRMRSVDD SEDQYAYQTA VNIGGHVFKG ILYDEGPESQ YMTAGESSSG 300 GGSGSAGVQT QHNLLSSGAA ATTATSAATT SASGGTAAEG GGGQGQAFFD PSLYPAPLST 360 FMAGTQFFPP PRS

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MAGFFSLGGG SGGRGGGGGG GGGNTPHHPH HHHHQQNSSN AAATEISPES WFLYRNDQEI  60
PAAYKGFELW QEHQPHPHLN SLQELYPSSA VGLGVGPSSR NPHMSPSSPA AADEPLRSAA  120
FVMMRSAAAG TGAAGISCQD CGNQAKKDCS HMRCRTCCRS RGFQCQTHVK STWVPASKRR  180
ERQHHLSALN QQQEQQQSLQ LHSRETPKRQ RDDDNPPTSS SLLCSHRLPS TISGLEMGNF  240
PAKVSLNAAF QCVRMRSVDD SEDQYAYQTA VNIGGHVFKG ILYDEGPESQ YMTAGESSSG  300
GGSGSAGVQT QHNLLSSGAA ATTATSAATT SASGGTAAEG GGGQGQAFFD PSLYPAPLST  360
FMAGTQFFPP PRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	20	GGRGGGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	7e-74	SRS family protein