PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019172370.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 248aa    MW: 28067.9 Da    PI: 7.422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019172370.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41.1e-072572655
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                    + +E++RR++++s +  L +llP  +    ++++   + L ++v+YIk L+
  XP_019172370.1 25 KYIEKNRRNHLKSLYTDLFSLLPAhQ---MQERMALPDQLDETVKYIKCLE 72
                    569*********************55...9999***************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MGREKGQSSR LTTTTKTPAP KLERKYIEKN RRNHLKSLYT DLFSLLPAHQ MQERMALPDQ  60
LDETVKYIKC LENQLEKSRQ KKEELLQKSR KTPNSSSCRN CIPAAGEQTE PPEIQVVDTS  120
PGMSVVLING LESISQFYGI IRVLHKQQGL QVTNATFQIH GNSTLQVAHE QVGKSEMGMI  180
AERLKVVIKG CPGGEAIESE PLNSWDNNYD IERDNLGFPV LEQFLVQCQN PPPSFFWTAG  240
NEYYCAQN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-25bHLH family protein