PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019172380.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 246aa    MW: 27808.6 Da    PI: 7.422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019172380.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.25.3e-072570655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    + +E++RR++++s +  L +llP      ++++   + L ++v+YIk L+
  XP_019172380.1 25 KYIEKNRRNHLKSLYTDLFSLLPAH----QERMALPDQLDETVKYIKCLE 70
                    569*********************8....6999999***********985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MGREKGQSSR LTTTTKTPAP KLERKYIEKN RRNHLKSLYT DLFSLLPAHQ ERMALPDQLD  60
ETVKYIKCLE NQLEKSRQKK EELLQKSRKT PNSSSCRNCI PAAGEQTEPP EIQVVDTSPG  120
MSVVLINGLE SISQFYGIIR VLHKQQGLQV TNATFQIHGN STLQVAHEQV GKSEMGMIAE  180
RLKVVIKGCP GGEAIESEPL NSWDNNYDIE RDNLGFPVLE QFLVQCQNPP PSFFWTAGNE  240
YYCAQN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.16e-24bHLH family protein