PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019172388.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 236aa    MW: 26680.4 Da    PI: 6.5119
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019172388.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.25.2e-071560655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    + +E++RR+++++ +  L +llP      ++++   + L ++v+YIk L+
  XP_019172388.1 15 KYVEKNRRNQLKTLYTDLFSLLPAH----QERMALPDQLDETVKYIKCLE 60
                    568*********************8....6999999***********985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MASILPKTAP KLERKYVEKN RRNQLKTLYT DLFSLLPAHQ ERMALPDQLD ETVKYIKCLE  60
NQLEKSRQKK EELLQKSRKT PNSSSCRNCI PAAGEQTEPP EIQVVDTSPG MSVVLINGLE  120
SISQFYGIIR VLHKQQGLQV TNATFQIHGN STLQVAHEQV GKSEMGMIAE RLKVVIKGCP  180
GGEAIESEPL NSWDNNYDIE RDNLGFPVLE QFLVQCQNPP PSFFWTAGNE YYCAQN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-24bHLH family protein