PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019172407.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 342aa    MW: 37580.9 Da    PI: 7.6889
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019172407.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000472312681254
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +++ ++++ L++l+ +      +K + a++L++A+ YI+ L
  XP_019172407.1 231 RKEKLGDRIAGLQRLVAPF-----GKTDTASVLTEAIGYIHFL 268
                     6678889999999999998.....8***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    
MESSNLYHHQ LQEQCFGYGL SSLLDWNPIV SIDEDDEYYK PHLDGLMFPV LSPSSSAAAD  60
AIPAAIEQQY YHQHENYSDQ TGISMSSSQF SCNIIPVNSD YVVKREQHNS FDLNHNVFLG  120
RQIPAAARFG SMNNSSNNSP PRPPSLVSSI SAAYTDDGGG IIRCSQFPGN NNTTSYFGFG  180
NIHEAIHSPS SSSNKVSKAK RVSGAAMASH QQSKKPRTGS QRSSCPVLKV RKEKLGDRIA  240
GLQRLVAPFG KTDTASVLTE AIGYIHFLHD QIQALNLPYM KSSGDDSHHP HRTSRVVQAL  300
NMKNEEGKTT LDLKSRGLCL VPLSLTSYIS SCQMPMNIYG HN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.14e-38bHLH family protein