PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019172469.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HB-other

Protein Properties

Length: 408aa MW: 44805.9 Da PI: 7.1983

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019172469.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	38.8	1.6e-12	21	68	9	56
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++q+e+Le+ ++ ++ ps+e ++eL++kl+L+++q +vWF +R k+ XP_019172469.1 21 TSQIEILETIYAVEPFPSQELIAELSAKLELSDQQLRVWFEYKREKDQ 68 68******************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MEIGSGSGSG SGNDNLKWKA TSQIEILETI YAVEPFPSQE LIAELSAKLE LSDQQLRVWF 60 EYKREKDQRI TIGVPLQKGA STMPMILSNA VGEVWGEPVF GSPYGLRMVH QPGVRVPSYG 120 NEGLSTRQYD QLPWTILQHS RAVAAVEAQL RRPLIENGPV LGFKFDPLPP GAFRSPIGEQ 180 SPRAERHGGP IKGANQTSLQ YQFTQGEPSS GAAAYGPRVP PRYNTSPAEA QGTAIALSGG 240 NSYVHGTQLP ISGLLGPQGR PSNISRSLGV HVVPQSSSRL NRRVDDNFGG CSITGEENPL 300 MPSETQAIRD NRILARIWKI WAQPWIDSDK NVTNLLMVWR FLICFADALS LSPFTIDEFV 360 QALQDSASGL LGQVHIMLLR SIIKDIEVAG RIFVHLCEGR WRLIDSFI

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MEIGSGSGSG SGNDNLKWKA TSQIEILETI YAVEPFPSQE LIAELSAKLE LSDQQLRVWF  60
EYKREKDQRI TIGVPLQKGA STMPMILSNA VGEVWGEPVF GSPYGLRMVH QPGVRVPSYG  120
NEGLSTRQYD QLPWTILQHS RAVAAVEAQL RRPLIENGPV LGFKFDPLPP GAFRSPIGEQ  180
SPRAERHGGP IKGANQTSLQ YQFTQGEPSS GAAAYGPRVP PRYNTSPAEA QGTAIALSGG  240
NSYVHGTQLP ISGLLGPQGR PSNISRSLGV HVVPQSSSRL NRRVDDNFGG CSITGEENPL  300
MPSETQAIRD NRILARIWKI WAQPWIDSDK NVTNLLMVWR FLICFADALS LSPFTIDEFV  360
QALQDSASGL LGQVHIMLLR SIIKDIEVAG RIFVHLCEGR WRLIDSFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	1e-26	HB-other family protein