PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019172633.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24254.7 Da    PI: 9.6678
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019172633.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.83.9e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++gklye+ss
  XP_019172633.1  9 KRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPKGKLYEFSS 59
                    79***********************************************96 PP
2K-box72.71.1e-2482173899
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     ++ e++ ++ ++e+a + ++++ L++++R+llGe+Les+s  eLqq+e+qLe+sl++iR++Kn +++e i +l++ e+ l+++n +Lrk+le
  XP_019172633.1  82 RTVEQNIQHFKEEIATMSRNVDLLENTKRKLLGEGLESCSTDELQQIEEQLEQSLSNIRARKNFIYKERITKLKEEEETLRRHNAELRKRLE 173
                     467899**********************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MVRGKTEMKR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIVFSP KGKLYEFSSS  60
SSPSKTIERY ETNSKNMGVH KRTVEQNIQH FKEEIATMSR NVDLLENTKR KLLGEGLESC  120
STDELQQIEE QLEQSLSNIR ARKNFIYKER ITKLKEEEET LRRHNAELRK RLEVKSLTLS  180
TVQQDIDPQQ KIMEVETQLF IGPPERSPH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.12e-62MIKC_MADS family protein