PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019172755.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 621aa MW: 70356.6 Da PI: 6.8211

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019172755.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.2	5.8e-18	82	178	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fY++YA +vGF+ r+s+ +ks r+g +++++ vC+++g+++++++ t+ + r+ra++r+gCkak++vk++++g + +++e+ H+ XP_019172755.1 82 FYKQYAGTVGFDYRQSSIRKS-RDGVVVEKHVVCNRQGFKQSSSSIqymhgvdakTTLAMRRRATNRVGCKAKVVVKLKSNGLYFAHSFEELHTY 175 9**************9999.8999***********9988799999889999******************************87 PP FAR1 88 ela 90 ++ XP_019172755.1 176 LMC 178 665 PP

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence
MEPAVDLEFV GGVCDKDNST DAGVEGSGGC DGGNSTDVGV QDNVCDLEIS PGLTKYWRPV 60 CTDSLKPLVG QPFHSLDGAI VFYKQYAGTV GFDYRQSSIR KSRDGVVVEK HVVCNRQGFK 120 QSSSSIQYMH GVDAKTTLAM RRRATNRVGC KAKVVVKLKS NGLYFAHSFE ELHTYLMCSI 180 IARQFLKVNR SLDAGHQMFI ASCARANIGS VRSYRLFTEI VGEYSNVGAT GVDFKNFKRD 240 LMAHILNGDA QLFIDTFFKR RELCEAFDFE YDVDEVDQLS RVFWADAVSR KNFALFGDVS 300 FDATYRTSMY KLIFVPFTGI DNHKRSINFG AGLLTREDVD LYVWLLEKFK KTMCHDPICV 360 VTDQDLAVKL RLLLLVCLVV PVLSKDEVFR RKLNGIVWNK SLDSKSFEDA WSYIMEEYDL 420 GDNGWFRYLF ECRTFWASPY FYDEFMSGLR HAQAKLTADC ESCFPVLKTP LALEKHAIDV 480 YTISVFYDVQ AKPYIRQENK EHEGMKGDRN GEEADPVVVQ KNFGALKDWG GSENIDPGEK 540 KGGKEEGELS YSESENGSYD ESNNDSAEDS EYEREKEMEE KRKRYLKEVN ASPMNEGNQG 600 RKGKKKGGRK KRGKGRGHLK K

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence

MEPAVDLEFV GGVCDKDNST DAGVEGSGGC DGGNSTDVGV QDNVCDLEIS PGLTKYWRPV  60
CTDSLKPLVG QPFHSLDGAI VFYKQYAGTV GFDYRQSSIR KSRDGVVVEK HVVCNRQGFK  120
QSSSSIQYMH GVDAKTTLAM RRRATNRVGC KAKVVVKLKS NGLYFAHSFE ELHTYLMCSI  180
IARQFLKVNR SLDAGHQMFI ASCARANIGS VRSYRLFTEI VGEYSNVGAT GVDFKNFKRD  240
LMAHILNGDA QLFIDTFFKR RELCEAFDFE YDVDEVDQLS RVFWADAVSR KNFALFGDVS  300
FDATYRTSMY KLIFVPFTGI DNHKRSINFG AGLLTREDVD LYVWLLEKFK KTMCHDPICV  360
VTDQDLAVKL RLLLLVCLVV PVLSKDEVFR RKLNGIVWNK SLDSKSFEDA WSYIMEEYDL  420
GDNGWFRYLF ECRTFWASPY FYDEFMSGLR HAQAKLTADC ESCFPVLKTP LALEKHAIDV  480
YTISVFYDVQ AKPYIRQENK EHEGMKGDRN GEEADPVVVQ KNFGALKDWG GSENIDPGEK  540
KGGKEEGELS YSESENGSYD ESNNDSAEDS EYEREKEMEE KRKRYLKEVN ASPMNEGNQG  600
RKGKKKGGRK KRGKGRGHLK K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	581	606	KRKRYLKEVNASPMNEGNQGRKGKKK
2	581	614	KRKRYLKEVNASPMNEGNQGRKGKKKGGRKKRGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-45	FAR1 family protein