PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019172850.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 504aa MW: 58806.6 Da PI: 7.3581

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019172850.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.3	3.4e-15	58	129	1	69
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvk 69 +fY+eYAk vGF+vr +++k+ r g++ + + Cs+eg+++e+k+ t+k+rr+r+++r+gCka++ + XP_019172850.1 58 QFYEEYAKVVGFDVRHGSKRKN-RFGQVSIKYMLCSREGYKAERKEPnnssTVKQRRRRVSNRIGCKARMINR 129 6***************9999.66669999999****99988889999**************9755 PP

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence
MENSPCTAFP GDAHRAQHEM ECEMEIHDDG TKYWTPPTTK EKTPFEGQRF KTVEDGIQFY 60 EEYAKVVGFD VRHGSKRKNR FGQVSIKYML CSREGYKAER KEPNNSSTVK QRRRRVSNRI 120 GCKARMINRQ LDIGHKTFLA HCAKANIGPA KAFRLFKEMV GSFTDVGATC IDFCNFRRDL 180 LAYIAEADAQ MVIEDMFKRK EDNPDFYFDF DIDEEAQLTR LFWADAECRR NYAYYGDVMS 240 FDATYSTNRY KLVFVPFTGV DNHKRCITFG AGLIAKEDVE SYEWLVTKFK TAMEYTPRCT 300 TTDQDPALKI VVPHIMPTTR HRLCMWHIMS KVGEKVGVAL LHNADFKKEL NNTVWDDTLT 360 VDEFERRWTT LMRNYNLEEH RWFAQLYDAC ASWIPAYFND LPMGGLLRTT SRSESENNYF 420 GKFTNHHSSL VEFMAQYNSA IGEQRHRQSK LNAENEGSYP ETKTPLSIEK HAARVYTVNI 480 FYEFQQEVWD GLTKLKKPVE DCLK

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence

MENSPCTAFP GDAHRAQHEM ECEMEIHDDG TKYWTPPTTK EKTPFEGQRF KTVEDGIQFY  60
EEYAKVVGFD VRHGSKRKNR FGQVSIKYML CSREGYKAER KEPNNSSTVK QRRRRVSNRI  120
GCKARMINRQ LDIGHKTFLA HCAKANIGPA KAFRLFKEMV GSFTDVGATC IDFCNFRRDL  180
LAYIAEADAQ MVIEDMFKRK EDNPDFYFDF DIDEEAQLTR LFWADAECRR NYAYYGDVMS  240
FDATYSTNRY KLVFVPFTGV DNHKRCITFG AGLIAKEDVE SYEWLVTKFK TAMEYTPRCT  300
TTDQDPALKI VVPHIMPTTR HRLCMWHIMS KVGEKVGVAL LHNADFKKEL NNTVWDDTLT  360
VDEFERRWTT LMRNYNLEEH RWFAQLYDAC ASWIPAYFND LPMGGLLRTT SRSESENNYF  420
GKFTNHHSSL VEFMAQYNSA IGEQRHRQSK LNAENEGSYP ETKTPLSIEK HAARVYTVNI  480
FYEFQQEVWD GLTKLKKPVE DCLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-74	FAR1 family protein