PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019172854.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 215aa MW: 24893.5 Da PI: 9.6799

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019172854.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.3	4.5e-17	20	105	4	91
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 n YA++vGFsvrk +++++ +++i +++f C k g++e+ ++ + ++ rtg ++ + +g w vtk ++eHnHel++ XP_019172854.1 20 NGYAYRVGFSVRKCQQRYKASTKSIQMKRFFCAKVGYKEKPNSG--VKVYSKIDIRTGYGTLVQFDVDGNGMWTVTKHVKEHNHELCS 105 78**********************************999887..899999********************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MKIWVGIVVS NSDEAYELCN GYAYRVGFSV RKCQQRYKAS TKSIQMKRFF CAKVGYKEKP 60 NSGVKVYSKI DIRTGYGTLV QFDVDGNGMW TVTKHVKEHN HELCSFGKSH LPRSHRRVGN 120 NHLEYLKDMK KSGVALADAM ATAISIVFPT SRHHICIWHI GENSKKHIKA LRNHNDFLDM 180 FNCLLKYTET EAEFEFYWTS LEVMNLQHRN NGYSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	1e-11	FAR1 family protein