PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019172923.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 372aa    MW: 42745.1 Da    PI: 9.6606
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019172923.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.22.8e-1835132189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                     +fY +YA++vGF+vr+ + +k+   ge+ ++ + Cs+eg++++ k+           + +++r+r+++r+gC+ak+  k++  g + v  le+ H
  XP_019172923.1  35 EFYIRYARTVGFNVRRGSDSKN-SCGEVLRKYLLCSREGFKQPAKELcsggdvvndpSISKKRRRVTNRVGCNAKIIFKLKGYGGYSVFYLEERH 128
                     6****************99998.7888****************9998********99999999******************************** PP

            FAR1  86 nHel 89 
                     +H l
  XP_019172923.1 129 THCL 132
                     **88 PP
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    
MDISPGKTNY WVPVCDNAIK PFVGQWFSKL DDGVEFYIRY ARTVGFNVRR GSDSKNSCGE  60
VLRKYLLCSR EGFKQPAKEL CSGGDVVNDP SISKKRRRVT NRVGCNAKII FKLKGYGGYS  120
VFYLEERHTH CLYSEASKPF MRINRKLDLG HQIFVANCAK ANIGSIKSWK LYRKMVGDYT  180
DVGATGVDFQ NFKRDLMAYI RGGDAQLIVE KFLHKKELWS SFFFDYDVDE YDQLSRVFWA  240
DPVARRNFAC FGDVVSFDAT YRTNMYKLVF VPFTGIDNHK KSVTFAAGLI AKKDVESYVW  300
LLDNFKRAMG HEPTYILTDQ DPAMRVAIPT VFNSARHRFC MWHIMSKVGD KVGSVVAKDQ  360
SFRRALNDVV WD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19599KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-53FAR1 family protein