PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019172967.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 23962.1 Da    PI: 8.4716
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019172967.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.24.6e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++nrqvtfskRrng+lKKA+EL +LCdaev ++ifsstgkl+e++s
  XP_019172967.1 10 RIDNSTNRQVTFSKRRNGLLKKAKELGILCDAEVGLMIFSSTGKLHEFAS 59
                    8***********************************************86 PP
2K-box72.99.5e-2578157585
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                     ++ ++ +++ + +q+e+a L+++++n+q+ +R+l+Ge L  Ls+keLq+Le+qLe sl+ iR kK+++l++qi+el +k +
  XP_019172967.1  78 QSPQNPASELKFWQTEAAILRQQLHNMQEDHRKLMGE-LYGLSVKELQNLENQLEMSLRGIRMKKEQILIDQIQELTNKFQ 157
                     4444788999**************************8.9************************************998865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MGRGKVVIRR IDNSTNRQVT FSKRRNGLLK KAKELGILCD AEVGLMIFSS TGKLHEFAST  60
SMRSVIERYN KTQDESLQSP QNPASELKFW QTEAAILRQQ LHNMQEDHRK LMGELYGLSV  120
KELQNLENQL EMSLRGIRMK KEQILIDQIQ ELTNKFQVYG TRDPNTVNGD TISPYDFTIS  180
EESHAHIHLQ LSQPQPQNFS DRATALDST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-80MIKC_MADS family protein