PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019172969.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 196aa MW: 22382.3 Da PI: 9.4413

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019172969.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.3	4.1e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++nrqvtfskRrng+lKKA+EL +LCdaev ++ifsstgkl+e++s XP_019172969.1 10 RIDNSTNRQVTFSKRRNGLLKKAKELGILCDAEVGLMIFSSTGKLHEFAS 59 8***********************************************86 PP
2	K-box	63.3	8.9e-22	79	146	5	73
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 ++ ++ +++ + +q+e+a L+++++n+q+ +R+l+Ge L Ls+keLq+Le+qLe sl+ iR kK +++ XP_019172969.1 79 QSPQNPASELKFWQTEAAILRQQLHNMQEDHRKLMGE-LYGLSVKELQNLENQLEMSLRGIRMKKFQVY 146 4444788999************************8.9************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence
MGRGKVVIRR IDNSTNRQVT FSKRRNGLLK KAKELGILCD AEVGLMIFSS TGKLHEFAST 60 SSMRSVIERY NKTQDESLQS PQNPASELKF WQTEAAILRQ QLHNMQEDHR KLMGELYGLS 120 VKELQNLENQ LEMSLRGIRM KKFQVYGTRD PNTVNGDTIS PYDFTISEES HAHIHLQLSQ 180 PQPQNFSDRA TALDST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	2e-72	MIKC_MADS family protein