PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019172978.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 207aa MW: 23886 Da PI: 6.8116

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019172978.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	58	110	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le+ F ++++ + ++ +LA++lgL+ rqV vWFqNrRa++k XP_019172978.1 58 KRKLSDEQVKLLEQSFWDEHKLETGRKDRLASELGLDPRQVAVWFQNRRARWK 110 45899***********************************************9 PP
2	HD-ZIP_I/II	118.2	4.4e-38	57	148	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eqvklLE+sF e+kLe+ rK +la+eLgl+prqvavWFqnrRAR+k+k++E++y++Lk+++++ + e++rLe++v +L+e+l++ XP_019172978.1 57 RKRKLSDEQVKLLEQSFWDEHKLETGRKDRLASELGLDPRQVAVWFQNRRARWKSKRIEEEYSKLKSEHETAVVEKCRLEAQVLKLKEQLSD 148 8***************************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence
MTSNLSNNND LDDPMAMISE YYSGVYTHLV PEQVEAKPRR RRRKSKAGDG GVEMMMRKRK 60 LSDEQVKLLE QSFWDEHKLE TGRKDRLASE LGLDPRQVAV WFQNRRARWK SKRIEEEYSK 120 LKSEHETAVV EKCRLEAQVL KLKEQLSDAE KKIQRLSLEL LDGASAAASP SSSSFSMVSS 180 PPFLGDEFMT GSFDNVFYVP EWDNLYI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	39	60	RRRRRKSKAGDGGVEMMMRKRK
2	40	61	RRRRRKSKAGDGGVEMMMRKRK
3	41	46	RRRKSK
4	41	62	RRRRRKSKAGDGGVEMMMRKRK
5	42	63	RRRRRKSKAGDGGVEMMMRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	2e-60	HD-ZIP family protein