PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019173038.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 254aa    MW: 27646.7 Da    PI: 8.1839
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019173038.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.4e-20126160135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  XP_019173038.1 126 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 160
                     ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MMQHRCSSSC GHCSFCGGGA ASSAAFSMFL SAMPNSNQTQ CYKTSGFHSE EDENVYSFAS  60
APASSVDCTL SLATPSTRRF NENEKRGERR MSNFCSWDIL QPSKQPPPSS VVVHKSAADT  120
VVPRRCANCD TTSTPLWRNG PRGPKSLCNA CGIRFKKEER RASAAAAATA TCAAAGGVGI  180
EAQHMINTSW VHHHHHHTQA QKMGYYSSAA AYGNEFRFID DDHRDSDAAG AIPFISWRLS  240
NVADRSSLVH DFTR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.13e-43GATA family protein