PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019173159.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 270aa    MW: 30061.1 Da    PI: 8.2568
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019173159.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89.1e-19124178256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tk q   Lee F+++++++ +++++LA++l+L  rqV vWFqNrRa+ k
  XP_019173159.1 124 RKKLRLTKAQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTK 178
                     678899***********************************************98 PP
2HD-ZIP_I/II124.64.6e-40124213191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+k q++lLEesF+++++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+kev+eL+ +l
  XP_019173159.1 124 RKKLRLTKAQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEVQELK-AL 213
                     69*************************************************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MGFDDICSTG LVLGLGFSCS DQASKVDVVH KAARKPPPMS FEPSLTLSLS GETFDRQAVK  60
KVVAAANNKV CVDQSATDLY RQDSAASSYS NASVKRERES EEAEMERVSS RVISDEDDDG  120
GNCRKKLRLT KAQSALLEES FKQHSTLNPK QKQDLARELN LRPRQVEVWF QNRRARTKLK  180
QTEVDCEFLK KCCETLTDEN RRLQKEVQEL KALKLAQPFY MQLPAATLTM CPSCERIGGA  240
AVEASNKSPF TMAPKPHFFN PAFTNPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173181RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.11e-87HD-ZIP family protein