PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019173178.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 239aa    MW: 25964.4 Da    PI: 8.4971
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019173178.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.73.5e-284107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +l+ll+a+p+  r+++++sl+yeA  r+ +P  G++g++++++++l+q 
  XP_019173178.1   4 SCNGCRVLRKGCSQNCSIRPCLqwiksPESQANATLFLAKFYGRAGLLNLLNAAPDRLRPEVFKSLLYEASGRIVNPLFGSTGLLSSGNWELCQN 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     +++++l ++
  XP_019173178.1  99 AVDAVLKGA 107
                     *99988765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MRMSCNGCRV LRKGCSQNCS IRPCLQWIKS PESQANATLF LAKFYGRAGL LNLLNAAPDR  60
LRPEVFKSLL YEASGRIVNP LFGSTGLLSS GNWELCQNAV DAVLKGAPIT PVASDATAAA  120
AVVLPLKACD IGHVHYKEGN RGKSGDLHRV RNRGRFKRSG AKIKESSICA GSSDEEVNRS  180
TSHESSLCHQ SPAANEEPES RQIQRLNSVE ISQPAPDVRH ADDDEIELEL TLGFAPRVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-66LBD family protein