PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173210.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 775aa MW: 86350.3 Da PI: 6.3229

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173210.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.3	2e-09	712	766	1	46
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 r +WT+eE+e l+++v++ + Wk I + g kgRt+ ++k++w++ XP_019173210.1 712 RVPWTKEEEEALKEGVAKCKSIgqkniAWKEILEFGGdrfwKGRTAMDLKDKWRN 766 789**************98899****************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 775 aa Download sequence
MVYRSSEVTF MANGFTCTSS LPWIWVVEAL ASSNQVDASL LIDLVKRIPK ISDDLGRSAR 60 EMVSFRILEN LLIKNNWIND DSSLSAGPKI RFDPSESCED VLGKILQELS ASNMKMPGPQ 120 VLKWDIQSFV TYKRSTLPQY ALLKLKDMIV KGTDPRLATL KERSGLSTTN QSGNVTSVDG 180 IAVNGTKEMR EESNFKCLAQ NVNSVASTQE NNNREETLPD RDLVLAKKRK SVSADHQGRE 240 IPGGGSISEN GCDPCTRVTK KCKQSVVFNK DCEHIIEHIE REGRSLGNES QAGALEESGS 300 PLRQINGNQQ QHDCSVSEMP QGTNAGGGVK NICIDAAGEE NAHAELRNSN DAKHPLVQQV 360 SHANEAERNF QHNLSNGGPI NESRDIIDCF HGPDPCNDNN EYHEESVEIA SKKTAFLSSQ 420 CTHSQDSFAT NDLRELCMKC NRGGQLLVCS SETCPLVVHD SCLGSIPNFE KDGKFYCPFC 480 AYSRAISEHM KFKKKASLAR KDLTAFIRFS IEPLKNVSTR SSRSKSSQSR QDDELCEKGE 540 ANSSRNSLRD NSSPECRANS EDKQQEKPSV SPEGRPPSND KSISSTSAMP VIFAKDPQEN 600 QAEQDTLSPR GGDQQHNETL AITIYRKPVF PFGDPEVSNQ DEPCTEVDVE KATVPQSVTS 660 LHHQPESSSS TEVEESSDEE NEKYVTSKYF IRFNRPQKQC SYPVITQWKR KRVPWTKEEE 720 EALKEGVAKC KSIGQKNIAW KEILEFGGDR FWKGRTAMDL KDKWRNICKG SPNKR

Sequence ? help Back to Top

Protein Sequence Length: 775 aa Download sequence

MVYRSSEVTF MANGFTCTSS LPWIWVVEAL ASSNQVDASL LIDLVKRIPK ISDDLGRSAR  60
EMVSFRILEN LLIKNNWIND DSSLSAGPKI RFDPSESCED VLGKILQELS ASNMKMPGPQ  120
VLKWDIQSFV TYKRSTLPQY ALLKLKDMIV KGTDPRLATL KERSGLSTTN QSGNVTSVDG  180
IAVNGTKEMR EESNFKCLAQ NVNSVASTQE NNNREETLPD RDLVLAKKRK SVSADHQGRE  240
IPGGGSISEN GCDPCTRVTK KCKQSVVFNK DCEHIIEHIE REGRSLGNES QAGALEESGS  300
PLRQINGNQQ QHDCSVSEMP QGTNAGGGVK NICIDAAGEE NAHAELRNSN DAKHPLVQQV  360
SHANEAERNF QHNLSNGGPI NESRDIIDCF HGPDPCNDNN EYHEESVEIA SKKTAFLSSQ  420
CTHSQDSFAT NDLRELCMKC NRGGQLLVCS SETCPLVVHD SCLGSIPNFE KDGKFYCPFC  480
AYSRAISEHM KFKKKASLAR KDLTAFIRFS IEPLKNVSTR SSRSKSSQSR QDDELCEKGE  540
ANSSRNSLRD NSSPECRANS EDKQQEKPSV SPEGRPPSND KSISSTSAMP VIFAKDPQEN  600
QAEQDTLSPR GGDQQHNETL AITIYRKPVF PFGDPEVSNQ DEPCTEVDVE KATVPQSVTS  660
LHHQPESSSS TEVEESSDEE NEKYVTSKYF IRFNRPQKQC SYPVITQWKR KRVPWTKEEE  720
EALKEGVAKC KSIGQKNIAW KEILEFGGDR FWKGRTAMDL KDKWRNICKG SPNKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	263	KKRKSVSADHQGREIPGGGSISENGCDPCTRVTKKCK