PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019173368.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 153aa    MW: 16977.1 Da    PI: 10.8843
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019173368.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA91.97.8e-2971124458
       CBFB_NFYA   4 lYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     ++VNaKQy++Il+RRq+Rakl ++++l  k+rkpy+h SRh hA++R RgsgGrF
  XP_019173368.1  71 IFVNAKQYHGILRRRQMRAKLVAQNRL-LKTRKPYMHGSRHLHAVNRVRGSGGRF 124
                     8**************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    
MRPTFFVDNL EVSTHSSGQA TTIHSSYNCS DDDLNFNGLF TAYGPQVNPH VVGFSTARLP  60
LPFDLADDGL IFVNAKQYHG ILRRRQMRAK LVAQNRLLKT RKPYMHGSRH LHAVNRVRGS  120
GGRFLSSKKA QHHHHSPSSS PNSVDVSMSA TAP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.15e-33NF-YA family protein