PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019173384.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 269aa    MW: 30895.1 Da    PI: 9.8321
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019173384.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd+ll ++++++G g W++++ + g++R++k+c++rw++yl
   XP_019173384.1 14 KGAWSEEEDDLLRKCIQKFGEGKWHLVPFRAGLNRCRKSCRLRWLNYL 61
                     79********************************************97 PP
2Myb_DNA-binding49.11.4e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ eE +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_019173384.1  67 RGHFSLEEADLILRLHKLLGNR-WSLIAGRIP-GRTANDVKNYWHSHL 112
                      799*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MVNSSARWSP RVRKGAWSEE EDDLLRKCIQ KFGEGKWHLV PFRAGLNRCR KSCRLRWLNY  60
LHPDIKRGHF SLEEADLILR LHKLLGNRWS LIAGRIPGRT ANDVKNYWHS HLKKKVVGMH  120
MASSNSSRQD NNWDDEKGKA PQIKENILFR PRPRRFFRTS LSSPALSTLT GKAKAVAYDA  180
PPPPHHHQLQ AQPEATSPPA DLLMVFNVQQ NNNSMATNFP AQTTAPPSHD GVKWWDLLYD  240
DDHQGLIDWT TDDDFPIDVD LLKLLDTTI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-56MYB family protein