PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173385.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRF

Protein Properties

Length: 374aa MW: 41393.9 Da PI: 7.4967

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173385.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.3	7.2e-25	78	121	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e XP_019173385.1 78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 121 79***************************************987 PP
2	QLQ	60.7	4.1e-21	10	44	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l+yKy+++++PvPp+Ll i+ XP_019173385.1 10 PFTATQWQELEHQALIYKYMVSGMPVPPDLLYSIR 44 8******************************9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MMNNGRSRLP FTATQWQELE HQALIYKYMV SGMPVPPDLL YSIRRSLDSS LSSKLLLHQP 60 PQHMGWSCFQ MGFGKKIDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV 120 EVINTVVTPT SSSAAAAPST PPPPTAIPFS SINKNTPTPP SLLYPHSTPS RSHQGIALSS 180 QDHTTNFLLD SLAYSRNNGY GHGMKDEVDE HVFFSSEGSG SIRSSISGSN NLADDSAWQL 240 APLTMASPPL GQLKQRDYCG PQNGYSASYL HLHEASRQQR QGGGGGEEDE EGEEYYGLGG 300 SGGSKTVGVG MMNPEDQQPK KVMHHFFDEW PKENKDSWLD SGDGDKYSAP RGPHLSISVP 360 NSSHDFFITH NGEK

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MMNNGRSRLP FTATQWQELE HQALIYKYMV SGMPVPPDLL YSIRRSLDSS LSSKLLLHQP  60
PQHMGWSCFQ MGFGKKIDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV  120
EVINTVVTPT SSSAAAAPST PPPPTAIPFS SINKNTPTPP SLLYPHSTPS RSHQGIALSS  180
QDHTTNFLLD SLAYSRNNGY GHGMKDEVDE HVFFSSEGSG SIRSSISGSN NLADDSAWQL  240
APLTMASPPL GQLKQRDYCG PQNGYSASYL HLHEASRQQR QGGGGGEEDE EGEEYYGLGG  300
SGGSKTVGVG MMNPEDQQPK KVMHHFFDEW PKENKDSWLD SGDGDKYSAP RGPHLSISVP  360
NSSHDFFITH NGEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-48	GRF family protein