PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019173473.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 283aa    MW: 31323.4 Da    PI: 7.9797
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019173473.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l  +v+++G g Wk I r          R+  ++k++w+++
   XP_019173473.1  5 KQKWTSEEEEALRAGVAKHGAGKWKNIQRDPEfnhllHSRSNIDLKDKWRNL 56
                     79***********************************9************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MGNPKQKWTS EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LHSRSNIDLK DKWRNLNVSA  60
NAQGSRDKSR SQKPKVNADV PMTPVPNALT HASSTPLLLD TATPADAAVE DNSKCLLDGK  120
TASKYNGMVY EALTNLKDPS GCDIGTIVNF IEQRHEVPPN FRRLLSSRLR RLVQQDKLEK  180
VQNCFRIKKE FLHASSTTPT PKIKDSGPKE DLQNTGYLGD TVEEAAIAAA YMIAEAENKS  240
FVAAEAVKEA ERVSRMAEDS DVLLQLAKDI YDKCARGEIV ILA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.13e-55MYB_related family protein