PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173492.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 813aa MW: 91926.3 Da PI: 8.8155

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173492.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46	1.7e-14	119	216	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 f ++Y++ GF+vr s+ +k+ r+g ++k+ +vCs+eg++ + ++ + +r+++ +gCka++ +k+ +dg+++v+ +e+ Hn XP_019173492.1 119 FNRQYGSLFGFDVRCSSVRKN-REGVVVKNLLVCSREGFKPGGHGPgvvngaldqpAVALKCRRVSNIVGCKARMLLKMVDDGVFVVHFIEHRHN 212 5579***********9998.8888**********99888899999998888899********************************* PP FAR1 87 Hela 90 H l+ XP_019173492.1 213 HCLC 216 *998 PP

Sequence ? help Back to Top
Protein Sequence Length: 813 aa Download sequence
MGKFEAMNLE LMRNKMAKKE KLGPLRYTEK KNHVVGKSSD PVRREEVGKY LVKEGNLYLS 60 RHTLKVMANM KTFVRSGSIQ GCVIDVSPDG TKFWTPSCDE VVRPFEGQLF PSLAHGIVFN 120 RQYGSLFGFD VRCSSVRKNR EGVVVKNLLV CSREGFKPGG HGPGVVNGAL DQPAVALKCR 180 RVSNIVGCKA RMLLKMVDDG VFVVHFIEHR HNHCLCSDVA RPFLRVNRSI DVQYQIFMLK 240 CARANVGPNR SFRLAREFAG SYSNVGATCV DFKNLKRDFM AYIGTSDAHV VVKKYAKKVE 300 DCPDYFFKYD LDSEDQLRRV FWADPIAKEN YLTFGDVVSF DATYGTNRYG MVLVPFTGVD 360 NHKRGVTFAI GLISREDVDS YVWLLQQFKS AMGCVPSFTI SDQDPSMRIA VPQVFGTMRH 420 RFCMWHIMSK VGEKVGNVLS KDEEFRRALN DVVWNETLSV EEFERGWQDV MEKYSLGDHR 480 WFRLMYDLRS YWIPAFFNDL FMGGLLRTTS RSEAVNSVFG SCTNQHNSLS AMFNNFEGAI 540 DAQRATQAKL NAECEGHFPT SETPLLIEKH AAAVYTVNIF YDVQAEVIAG SFSCRSVRSN 600 VDGVVTRYEV QDGDELVHTV IFDSGNIVVE CTCNMFTRVE LLCRHIFWVF KDRKVVSIPS 660 RYVVSRWTRG ACVRQLLGVQ RRGSADVDVA IGEAWAEFFS CMIIASRSVD NVMKLTAYLK 720 DFNANLLAEN GPNDPSSSSS SKKQLFEVFC GASLDGEVHI RPPPISINKG GGKRFKSSRE 780 LAIEKAGRRQ RQCQTCEKYG HNSHTCPMRN VNI

Sequence ? help Back to Top

Protein Sequence Length: 813 aa Download sequence

MGKFEAMNLE LMRNKMAKKE KLGPLRYTEK KNHVVGKSSD PVRREEVGKY LVKEGNLYLS  60
RHTLKVMANM KTFVRSGSIQ GCVIDVSPDG TKFWTPSCDE VVRPFEGQLF PSLAHGIVFN  120
RQYGSLFGFD VRCSSVRKNR EGVVVKNLLV CSREGFKPGG HGPGVVNGAL DQPAVALKCR  180
RVSNIVGCKA RMLLKMVDDG VFVVHFIEHR HNHCLCSDVA RPFLRVNRSI DVQYQIFMLK  240
CARANVGPNR SFRLAREFAG SYSNVGATCV DFKNLKRDFM AYIGTSDAHV VVKKYAKKVE  300
DCPDYFFKYD LDSEDQLRRV FWADPIAKEN YLTFGDVVSF DATYGTNRYG MVLVPFTGVD  360
NHKRGVTFAI GLISREDVDS YVWLLQQFKS AMGCVPSFTI SDQDPSMRIA VPQVFGTMRH  420
RFCMWHIMSK VGEKVGNVLS KDEEFRRALN DVVWNETLSV EEFERGWQDV MEKYSLGDHR  480
WFRLMYDLRS YWIPAFFNDL FMGGLLRTTS RSEAVNSVFG SCTNQHNSLS AMFNNFEGAI  540
DAQRATQAKL NAECEGHFPT SETPLLIEKH AAAVYTVNIF YDVQAEVIAG SFSCRSVRSN  600
VDGVVTRYEV QDGDELVHTV IFDSGNIVVE CTCNMFTRVE LLCRHIFWVF KDRKVVSIPS  660
RYVVSRWTRG ACVRQLLGVQ RRGSADVDVA IGEAWAEFFS CMIIASRSVD NVMKLTAYLK  720
DFNANLLAEN GPNDPSSSSS SKKQLFEVFC GASLDGEVHI RPPPISINKG GGKRFKSSRE  780
LAIEKAGRRQ RQCQTCEKYG HNSHTCPMRN VNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-89	FAR1 family protein