PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173502.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 187aa MW: 21298.1 Da PI: 9.3907

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173502.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.3	8.4e-19	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l ++++ +G + Wkt+a + g++R++k+c++rw++yl XP_019173502.1 15 KGAWTAEEDKKLTHYIENHGAKKWKTVAIKSGLNRCGKSCRLRWLNYL 62 79********************************************97 PP
2	Myb_DNA-binding	46.8	6.8e-15	69	113	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+ ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l XP_019173502.1 69 GNIAEDEADLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 113 566689*************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence
MTSRKSGGAR MHVHKGAWTA EEDKKLTHYI ENHGAKKWKT VAIKSGLNRC GKSCRLRWLN 60 YLRPNIKRGN IAEDEADLIL RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN THLSKKVTQL 120 GKSSLPATEN QPPKNGMADA EQMGGNKESE EDPELNFDVD EFFDFSVEGT YGTEWVNKFL 180 EVEKGMP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14750.1	2e-52	MYB family protein