PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173759.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARR-B

Protein Properties

Length: 576aa MW: 64377.7 Da PI: 5.6533

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173759.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	86.3	3.1e-27	204	257	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+ L G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYR+ XP_019173759.1 204 KPRVVWSVELHQKFVAAVNYL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRI 257 79*****************.******************************6 PP
2	Myb_DNA-binding	35.2	2.8e-11	206	256	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e+++++v av+ lG + +k+I + m+ +++t++++ s++qky+ XP_019173759.1 206 RVVWSVELHQKFVAAVNYLGIDkaVPKRILELMNvEKLTRENVASHLQKYR 256 678******************************99***********7 PP
3	Response_reg	79.3	1.3e-26	27	135	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+p+ +++l+++l+k +y +v+++ ++ alell+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++a+g+ +++ + + G XP_019173759.1 27 VLAVDDNPTCLMVLENLLRKCQY-HVTATNQAIRALELLRENKneFDLVISDVDMPDMDGFKLLELVGL-EMDLPVIMLSAYGDTNLVMKGITHG 119 799******************.***********888889***************87754.558****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +eel + XP_019173759.1 120 ACDYLLKPVRIEELKN 135 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MYVTGPKMTV EQRNDKQNDE FPVGMRVLAV DDNPTCLMVL ENLLRKCQYH VTATNQAIRA 60 LELLRENKNE FDLVISDVDM PDMDGFKLLE LVGLEMDLPV IMLSAYGDTN LVMKGITHGA 120 CDYLLKPVRI EELKNIWQHV LRRKKFEQKI SNKPDGELGR GFRGMGKTDR NGKPTRKRKD 180 QSDDEDEELD ENSGRSEDPS AQKKPRVVWS VELHQKFVAA VNYLGIDKAV PKRILELMNV 240 EKLTRENVAS HLQKYRIFLK RLDSVASQHA NMVSVLGSAD PSYLRMGSLN NIGNIPFNPL 300 RSISSGSVLT RLNSPSGLGM CGFAPSSMIQ LANAPNSSSS ITSEINFQQS IQPGNRDMDI 360 LEGMPLPLGT DNLGVTHLYP FSNGTRMPER KIDGDGRRNL NIGVSDNSII LRSRGQCVQR 420 KDFLDNHFPV IASPMNTERC NDNWPTATQS SLLEANSFGT GVYSHHAMPG DLGNNAMSSN 480 LHNPLNSVCP QVPDTRTEMQ CLTTIIDNVS GVKMNFSPRQ DWDDFEPDSA HVPSLVCSSS 540 ANTFLPPDGG QRQQQQQHDE FENAAVDMKQ EYLEEQ

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MYVTGPKMTV EQRNDKQNDE FPVGMRVLAV DDNPTCLMVL ENLLRKCQYH VTATNQAIRA  60
LELLRENKNE FDLVISDVDM PDMDGFKLLE LVGLEMDLPV IMLSAYGDTN LVMKGITHGA  120
CDYLLKPVRI EELKNIWQHV LRRKKFEQKI SNKPDGELGR GFRGMGKTDR NGKPTRKRKD  180
QSDDEDEELD ENSGRSEDPS AQKKPRVVWS VELHQKFVAA VNYLGIDKAV PKRILELMNV  240
EKLTRENVAS HLQKYRIFLK RLDSVASQHA NMVSVLGSAD PSYLRMGSLN NIGNIPFNPL  300
RSISSGSVLT RLNSPSGLGM CGFAPSSMIQ LANAPNSSSS ITSEINFQQS IQPGNRDMDI  360
LEGMPLPLGT DNLGVTHLYP FSNGTRMPER KIDGDGRRNL NIGVSDNSII LRSRGQCVQR  420
KDFLDNHFPV IASPMNTERC NDNWPTATQS SLLEANSFGT GVYSHHAMPG DLGNNAMSSN  480
LHNPLNSVCP QVPDTRTEMQ CLTTIIDNVS GVKMNFSPRQ DWDDFEPDSA HVPSLVCSSS  540
ANTFLPPDGG QRQQQQQHDE FENAAVDMKQ EYLEEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	1e-123	ARR-B family protein