PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173874.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 336aa MW: 37910.6 Da PI: 7.0422

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173874.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.6	1.1e-14	64	162	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +Y +YA+ GF+vr ++ k+ r gei++r +vCs +g + +k ++ er +r ++r++C a++ +k+++g+++v+ l++e + XP_019173874.1 64 CYINYARISGFDVRHNSVKRD-RGGEIYSRYLVCSLQGVKGGGNKPrgyeqtlggkERWERCRRLSNRVNCGARIGFTKKSSGEFKVSVLVEEQT 157 799**********998887.8999*********99988887899999997778899******************************* PP FAR1 87 Helap 91 H+l++ XP_019173874.1 158 HKLCS 162 *85 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MTTSNSDAGD LTDGLAMIPD TESEPGFAVG LTTTDQQQWT PIVDASIQPT WGRLFKTLNE 60 GIQCYINYAR ISGFDVRHNS VKRDRGGEIY SRYLVCSLQG VKGGGNKPRG YEQTLGGKER 120 WERCRRLSNR VNCGARIGFT KKSSGEFKVS VLVEEQTHKL CSESSKVFMR INRQLDVVQQ 180 VFLSNCVKAN IGASTGLRFC KEATGSYANI GATDVEFHNF KRDVQTYVDV ADGEMIIATF 240 KAKHEVCSDF FFEYDLDEEN PVSRLFWADP LSRRKFSCYG DHISFDATYG ANRYSMVFVS 300 FTGVDNHKRC ITFRADLLTK EDADLYSWLL EKFISA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-27	FAR1 family protein