PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019173891.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 599aa MW: 67755.7 Da PI: 8.5733

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019173891.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.9	2.6e-21	47	134	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Yn YA++vGFsvrk +++++ +++i +++f C k g++++ ++ + ++ rtgC a ++ dg w vtk +eHnHel++ XP_019173891.1 47 LYNGYAYRVGFSVRKGQQRYKASTKSIQMKRFFCAKAGYKQKPNSG--VKLYSKIDMRTGCGAFVQFDVGGDGMWTVTKHLKEHNHELCS 134 7**************************************99887..888999********************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 599 aa Download sequence
MNEDCVGDSI SNDQAELNID IDGSSSSPVD EDLVGVVVRN VDEAFELYNG YAYRVGFSVR 60 KGQQRYKAST KSIQMKRFFC AKAGYKQKPN SGVKLYSKID MRTGCGAFVQ FDVGGDGMWT 120 VTKHLKEHNH ELCSFGKSHL LRSHRRVGNN QLEYLKDMKS SGVALADGMR FLKHQSGGSP 180 LVGFTNRDAY NSMASVSLKC LDGSDSNSLI EIFRRRQSNE ADFFFDFEHI KALRNHKDFL 240 DMFNCVLKYT ETEAEFEVYW TRMVTKYNCH KNTWLEKLYD CREKWCPAFN KDYFSGGILS 300 SQRSESTNHA ISRRLSKTAG LCDFYSSFVS VISEWRSKEN GEDFRCSQGV PAMMMDHVKL 360 LSHARECKYH VWRPDIDIIR HEVTFKAINL DICCSCKLFS ELGILCCHCL RILHVHCVSS 420 IPDKYILKRW TKKVVEGRNV DIAYVFYNGG VPSSIWAVEI SRKFQRLIVS SQDNSVARQF 480 CDEAVANARK NIEAEIGDVN TEEGAVSSSS GIVQDPSSRR GKGVRNKRSS SVIEKKYNAA 540 RGRKSAANKL ASITKGSVQS LVLENISEIA RDGYLVHPST RGSQFVHFNK NVDHDVAID

Sequence ? help Back to Top

Protein Sequence Length: 599 aa Download sequence

MNEDCVGDSI SNDQAELNID IDGSSSSPVD EDLVGVVVRN VDEAFELYNG YAYRVGFSVR  60
KGQQRYKAST KSIQMKRFFC AKAGYKQKPN SGVKLYSKID MRTGCGAFVQ FDVGGDGMWT  120
VTKHLKEHNH ELCSFGKSHL LRSHRRVGNN QLEYLKDMKS SGVALADGMR FLKHQSGGSP  180
LVGFTNRDAY NSMASVSLKC LDGSDSNSLI EIFRRRQSNE ADFFFDFEHI KALRNHKDFL  240
DMFNCVLKYT ETEAEFEVYW TRMVTKYNCH KNTWLEKLYD CREKWCPAFN KDYFSGGILS  300
SQRSESTNHA ISRRLSKTAG LCDFYSSFVS VISEWRSKEN GEDFRCSQGV PAMMMDHVKL  360
LSHARECKYH VWRPDIDIIR HEVTFKAINL DICCSCKLFS ELGILCCHCL RILHVHCVSS  420
IPDKYILKRW TKKVVEGRNV DIAYVFYNGG VPSSIWAVEI SRKFQRLIVS SQDNSVARQF  480
CDEAVANARK NIEAEIGDVN TEEGAVSSSS GIVQDPSSRR GKGVRNKRSS SVIEKKYNAA  540
RGRKSAANKL ASITKGSVQS LVLENISEIA RDGYLVHPST RGSQFVHFNK NVDHDVAID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	2e-26	FAR1 family protein