PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174067.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 294aa MW: 32235.2 Da PI: 6.6013

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174067.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.6	4e-12	81	132	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ +r+++P + + ++ + a+i A++++k+L+ XP_019174067.1 81 QRMTHIAVERNRRKQMNEYLAVIRSMMPAS---YVQRGDQASIIGGAINFVKELE 132 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence
MLEDNTTTSM DNQSLHGYWD PNSSPEACNG GDHHPSLLVV DGSLPAAAAM DQPPATLSAA 60 AGRRKRRRTR TCKNKEELEN QRMTHIAVER NRRKQMNEYL AVIRSMMPAS YVQRGDQASI 120 IGGAINFVKE LEQHLQTLEA HNRVSNNNNQ PDNGGVSSPP LFADFFTFPQ YSKTQGATNG 180 VGSSSAGAPE AATSPAENRS ALADIEVTMV ESHANVKILS KKRPRQLLKI VANLQYLWLT 240 VLHLNVTTVD QMVLYSLSVK LEDGCQLTTV DEIADAVHQL LARIQEEAAC TSQN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	68	RKRRR
2	64	69	RKRRRT
3	82	93	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	6e-86	bHLH family protein