PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174085.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 400aa MW: 43962.3 Da PI: 7.3404

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174085.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.1	2.4e-30	180	238	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt a+C vkk+ver ed ++v++tYeg+H+h+ XP_019174085.1 180 LDDGYRWRKYGQKAVKNTHFPRSYYRCTAASCGVKKRVERWCEDASIVVTTYEGTHTHP 238 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MENKFDELIM KRDSVVSMGI PVFSDEIPSI SPPLQQALFD ISTCEADKTT YYSLGFLDAQ 60 HNNTTTPIRS NTIFDLIIHT PPPSAPSPVA STTSLPESSE VVMNTTPPTP NSSVLSSSSN 120 QEAIAVANDD QQQTSKTVEE EDEDRTTMKQ LKLKKKKKNE KKRQREARFA FMTKSEVDHL 180 DDGYRWRKYG QKAVKNTHFP RSYYRCTAAS CGVKKRVERW CEDASIVVTT YEGTHTHPCP 240 IKHAGSGGLA ALGIGNMPTP STSFFPTTTA HPQGGITSSS SSYCFQDNNN VILIPSPSPS 300 SQQLHYPLQP TTSYFRSPTT YTNNISSGAS LLCAHTTDSI TTTTLHTNLL ALPVPQRGRS 360 LPPSSLSLSS SSLIRDHGLL QDMVPFQMVK QEEQPGLPTN

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MENKFDELIM KRDSVVSMGI PVFSDEIPSI SPPLQQALFD ISTCEADKTT YYSLGFLDAQ  60
HNNTTTPIRS NTIFDLIIHT PPPSAPSPVA STTSLPESSE VVMNTTPPTP NSSVLSSSSN  120
QEAIAVANDD QQQTSKTVEE EDEDRTTMKQ LKLKKKKKNE KKRQREARFA FMTKSEVDHL  180
DDGYRWRKYG QKAVKNTHFP RSYYRCTAAS CGVKKRVERW CEDASIVVTT YEGTHTHPCP  240
IKHAGSGGLA ALGIGNMPTP STSFFPTTTA HPQGGITSSS SSYCFQDNNN VILIPSPSPS  300
SQQLHYPLQP TTSYFRSPTT YTNNISSGAS LLCAHTTDSI TTTTLHTNLL ALPVPQRGRS  360
LPPSSLSLSS SSLIRDHGLL QDMVPFQMVK QEEQPGLPTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	2e-37	WRKY family protein