PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019174088.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family DBB
Protein Properties Length: 304aa    MW: 33442.4 Da    PI: 6.7748
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019174088.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.74.3e-07443538
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     C+ +++ e+ +fC  ++  lC+ C  + H+       H+
  XP_019174088.1  4 QCDVCSKDEAAFFCVADEAALCHACDHKVHHAnklaskHQ 43
                    7******99********************74446666665 PP
2zf-B_box25.23.3e-085492238
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                    +++ C+ ++e ++ lfC++++  lC++C   +H+   Ht
  XP_019174088.1 54 QAPLCDICKERRAFLFCQQDRAILCRECDGPIHNAneHT 92
                    7899*****************************667865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MKIQCDVCSK DEAAFFCVAD EAALCHACDH KVHHANKLAS KHQRFTLHHP SSEQAPLCDI  60
CKERRAFLFC QQDRAILCRE CDGPIHNANE HTQKHDRFVL TGVKISATSA VYSSSSPDSG  120
ESVPSLRSKD SSSNKVVVAS SPTVPAPISK TTNSYSSSNL VPPMAVAQVN DKNGGADCLT  180
SSLSEYLEML PGYHVEELLD SSYPDGLCKM GDNDVLPFWD TDLESSLSCM SSERAGIWVP  240
QASPHHHQFQ HNQTQTLPSA TIAFGAQIGF KDPKASRRWA DDNSFAVPQI RPSSTTFKRS  300
RNFW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.13e-69DBB family protein