PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174094.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 269aa MW: 29946 Da PI: 8.62

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174094.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.9	1.1e-18	41	86	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd++l ++v+++G+++W++I++++ gR++k+c++rw + XP_019174094.1 41 KGPWSAEEDKILSRLVERYGPRNWSLISKYIK-GRSGKSCRLRWCNQ 86 79***************************9.*********985 PP
2	Myb_DNA-binding	55.1	1.8e-17	95	137	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ XP_019174094.1 95 SFSPAEDETILAAHAKYGNR-WATIARLLP-GRTDNAVKNHWNST 137 69****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence
MEAFNRSSST SSTSSDSSSS ESSFSAGGKA PRDGNRPERI KGPWSAEEDK ILSRLVERYG 60 PRNWSLISKY IKGRSGKSCR LRWCNQLSPS VEHRSFSPAE DETILAAHAK YGNRWATIAR 120 LLPGRTDNAV KNHWNSTLKR RYQHQNQNQN QNQNQTFDFT EVADAKSSPS GSVFFGLENS 180 TLCMNINAGE SPRVNTSSGR TFPLSHCDDE YDPMTTLSLA PPGMGGHELP ERRTESLPAG 240 FWDVMREVIA KEVREYVTSS FSGPSTGFH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	8e-58	MYB family protein