PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019174108.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 244aa    MW: 26845.2 Da    PI: 8.6269
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019174108.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17188225136
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                     C++C+t++  Tp++Rrgp g++tLCnaCGl+++ kg++
  XP_019174108.1 188 CTHCNTSSkaTPMMRRGPAGPRTLCNACGLFWANKGTM 225
                     ***********************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MQPTSAPGHF PGGGDCAAGK EEHTNNAGIG YEVQCIEGGA IGGFDGVEVP VPYGSVFTAA  60
DAAYAPDQLT LSFRGQVYVF DAVTLEKVQS VLLLLGGYEY TPGAFTTQRE NTDYSARCSD  120
PKRAESLNRF RQKRKERCYG RKIRYNIRHE VAVRMQRRKG QFASKNTIAG NAQMESGQDD  180
NSHQEIWCTH CNTSSKATPM MRRGPAGPRT LCNACGLFWA NKGTMRVLPK RRCSNTLTEM  240
EDVG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.36e-67GATA family protein