PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174158.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 266aa MW: 30784.3 Da PI: 4.7868

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174158.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	54	107	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le++Fe +++++ e++ ++A++lgL+ rq+ +WFqNrRa++k XP_019174158.1 54 KKRRLSVEQVHALEKVFEVDNKLDPERKVKIARELGLQPRQIAIWFQNRRARYK 107 566899***********************************************9 PP
2	HD-ZIP_I/II	123.9	7.4e-40	54	144	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls eqv++LE+ Fe ++kL+perKv++areLglqprq+a+WFqnrRAR+ktkqlE+dy+ Lk++y++l+ + ++e+e+e L +elk XP_019174158.1 54 KKRRLSVEQVHALEKVFEVDNKLDPERKVKIARELGLQPRQIAIWFQNRRARYKTKQLERDYNLLKANYETLHLNYIKVEQEKEGLIAELK 144 9*************************************************************************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MKRFSFCDSS ATLLYPLQEK DMKENLVYGG ELQAMLDGLD DEDSVEENVG MNGKKRRLSV 60 EQVHALEKVF EVDNKLDPER KVKIARELGL QPRQIAIWFQ NRRARYKTKQ LERDYNLLKA 120 NYETLHLNYI KVEQEKEGLI AELKGLKEKL VEEENNKECN HSHSANENQD PSAPRNCDLF 180 QLSSETKDLM DFKDGSSDSD SSGVLNNEDC SFHYPPLMPP KSSSLYHPQL VKMEENGFNA 240 AEDSCNIFSL DHPPNLYWYS ADYRNY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	54	83	KKRRLSVEQVHALEKVFEVDNKLDPERKVK
2	102	110	RRARYKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	3e-46	HD-ZIP family protein