PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174165.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 377aa MW: 41786.4 Da PI: 7.1374

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174165.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	1e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl XP_019174165.1 14 KGPWSPEEDAKLKAYIEEHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38	3.8e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ ++ G++ W+ Ia+ ++ gRt++++k++w++ XP_019174165.1 69 GGFSEEEDNIICSLFISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MGRAPCCDKN NVKKGPWSPE EDAKLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLFISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLFGK 120 QRREHGLKAG NGNVARQKQA EMRKAAVAAA ARENPMMMMM APLGNTNNSP PWPELPVLDP 180 IRYPAADNEP GFNDHHSIRN LLIKLGGKFR DDNDDDLKHK NLAAYPMENP SPVLVPPPPP 240 PLYQLSSAPT TDTTLNSPFS INEYNMEAEL RSLPGENCFP EQIPYTDNTN IPQKMDGLEF 300 LYDNMLNNNG RLGSSSGGAM MDWSEMMSYC SLAFAPPLST YTTTAVQPAN GLPAAQPHSA 360 ALFDGEELIS YSGTPPQ

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MGRAPCCDKN NVKKGPWSPE EDAKLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLFISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLFGK  120
QRREHGLKAG NGNVARQKQA EMRKAAVAAA ARENPMMMMM APLGNTNNSP PWPELPVLDP  180
IRYPAADNEP GFNDHHSIRN LLIKLGGKFR DDNDDDLKHK NLAAYPMENP SPVLVPPPPP  240
PLYQLSSAPT TDTTLNSPFS INEYNMEAEL RSLPGENCFP EQIPYTDNTN IPQKMDGLEF  300
LYDNMLNNNG RLGSSSGGAM MDWSEMMSYC SLAFAPPLST YTTTAVQPAN GLPAAQPHSA  360
ALFDGEELIS YSGTPPQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	2e-82	MYB family protein