PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174238.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 243aa MW: 26918.8 Da PI: 9.9333

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174238.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.9	4.2e-09	37	82	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++E RR+riNs +++Lr+l P++ +K +K +L++Av+ +k+L XP_019174238.1 37 RHAKAESERRKRINSHLSTLRKLFPHL-----TKKDKPRVLTEAVKELKEL 82 599*********************9.....8**********999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MKMLNSIPLQ TQNEVDYHLH HQRRYLAKKK SKEAANRHAK AESERRKRIN SHLSTLRKLF 60 PHLTKKDKPR VLTEAVKELK ELRQKVAEQL EQHQSEGETP LFLPGENDEV AVVPCDGEGE 120 SAVKATICCE DRPGLNRDLT EAVQSVKGRV VRAEMATVGG RTKVDVVVRW CGGGVGEKDL 180 GSLRRALKAV VENRSLGMLL CRRFRADTWA GPKVDGHANN SAQICGSLSN GSGLPDGLLF 240 NTV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	48	KKKSKEAANRHAKAESERRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	7e-26	bHLH family protein