PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019174311.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 207aa    MW: 22266.3 Da    PI: 7.9282
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019174311.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260902.9e-282104198
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlrr+C  +C+l+ ++     +++q++++ +v k+FG+s ++++++++p+++r+++++sl+yeA+ r+ +Pv+Gavg++++++++++  
  XP_019174311.1   2 SCNGCRVLRRGCGVNCILRSCLeeidnAQAQANATLFVSKFFGRSDLMSFISSVPNTRRPALFKSLLYEACGRTVNPVSGAVGLLSTGNWHVCVQ 96 
                     6*********************8888777889**************************************************************9 PP

          DUF260  91 kaelallk 98 
                     ++e++l++
  XP_019174311.1  97 AVETVLAG 104
                     99988765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MSCNGCRVLR RGCGVNCILR SCLEEIDNAQ AQANATLFVS KFFGRSDLMS FISSVPNTRR  60
PALFKSLLYE ACGRTVNPVS GAVGLLSTGN WHVCVQAVET VLAGGALQPI ATEFLSPPSF  120
DDASRIFHEG AWKIPEVSVV TQSQPSDPLN HQMPAGNKKK KRVSSAAFGS ETETETSSEV  180
YGCYESGCRS VRDAVGGKEP KLLNLFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-57LBD family protein