PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019174340.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 306aa    MW: 35276.1 Da    PI: 10.311
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019174340.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-182570147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ 
   XP_019174340.1 25 RGHWRPAEDEKLRQLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 70
                     899*****************************.***********996 PP
2Myb_DNA-binding59.95.5e-1977121147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++++eE+e+lv a++ +G++ W++I+r ++ gRt++ +k++w+ +
   XP_019174340.1  77 RRPFSEEEEERLVAAHRIHGNK-WALISRLFP-GRTDNAVKNHWHVL 121
                      679*******************.*********.***********987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MVETTGGGGG GASASSDDSS RTCPRGHWRP AEDEKLRQLV EQYGPQNWNS IAEKLQGRSG  60
KSCRLRWFNQ LDPRINRRPF SEEEEERLVA AHRIHGNKWA LISRLFPGRT DNAVKNHWHV  120
LMARRQREQS KLSVKRTYQQ VFNNVNVNDT NVFRRRYKSP DPSNKIISFF EFQNNPDSSR  180
PTFSLSKYTP PAPAPYSSPP LRPPSSDYSL LRHHKNSTNK NLGFSLVGSH GGVIRSDPPN  240
LKPWNFLNYS STFNDGAKNH EREYLFREKK KKERNEQQDK EDDEGEDKRE RRDVTFIDFL  300
GVGSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267273REKKKKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.13e-67MYB family protein