PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174346.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 771aa MW: 86216.7 Da PI: 9.1534

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174346.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.6e-07	168	188	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+fa G C+ G+ C+F H+ XP_019174346.1 168 TCRDFAT-GKCRKGSECRFLHP 188 5****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 771 aa Download sequence
MGETVRKRKS LWDAEEDTSL HVEPNDKNAW SGKGQYPSYQ ENSASKTDFL SPQNVPQESH 60 RSSQHGERVP ETEEADGKKD LYRSRRHPAR DRSRSRGRGE GRSRSPSRRR DRARYQVQKR 120 SGSRSRSRSR DRGNMKARSR SRSPSHNYKS DPHGWGDRRN GSRISSQTCR DFATGKCRKG 180 SECRFLHPDN LKSTDGFQLE DELAETLGNR LEHGHVSRCA NSEGHEIRDE LPDAYDIEHD 240 QTRKRNRVMI TCKDFIKGKC HWGASCKFLH AGVSGDNYER GVKNASLNYV QERESTKSTK 300 PLCKYFAAGK CFHENCKFSH DGPTPSYIET RPSDNIGGCR LDGKNKHPSG PNWDDAQRDS 360 NLSQIGIHPK RFMASPNGRD ANTSGSVLEK LTDSEEQTDG SSHVYEQGKT QEASGVNLSN 420 TVMKPEMSSN SFVMPYTSED KGKFGPNALH EVKNSRNSVH PVLLPGQSYQ VGENMIVSSE 480 PSFFTSSNQS RPRNQKEAAS STDTPSMEFP HNLSTAALVK LASQMKNSST SSMFKFENES 540 AKSELHSEVV PSDPSSALPM FSAKPNPDRY HAPGDSVELC TSGNFMMPLV NAPRLDEQKT 600 KVPLEKLNLS AVNPGAGEKN EVGGSGVMCN KDPLLKQREI CTDLEVNGNN KIVANKCDDG 660 QENKHSDNVE VHGKAEEVGG NKDDKAIRLF KNALIEFVKE ILKPTWKEGR MSREVHKTIV 720 KKVVDKVTST IQGEHIPKTQ EKIEQYLSYS KPKLSKLVQA YVERCLKAPD A

Sequence ? help Back to Top

Protein Sequence Length: 771 aa Download sequence

MGETVRKRKS LWDAEEDTSL HVEPNDKNAW SGKGQYPSYQ ENSASKTDFL SPQNVPQESH  60
RSSQHGERVP ETEEADGKKD LYRSRRHPAR DRSRSRGRGE GRSRSPSRRR DRARYQVQKR  120
SGSRSRSRSR DRGNMKARSR SRSPSHNYKS DPHGWGDRRN GSRISSQTCR DFATGKCRKG  180
SECRFLHPDN LKSTDGFQLE DELAETLGNR LEHGHVSRCA NSEGHEIRDE LPDAYDIEHD  240
QTRKRNRVMI TCKDFIKGKC HWGASCKFLH AGVSGDNYER GVKNASLNYV QERESTKSTK  300
PLCKYFAAGK CFHENCKFSH DGPTPSYIET RPSDNIGGCR LDGKNKHPSG PNWDDAQRDS  360
NLSQIGIHPK RFMASPNGRD ANTSGSVLEK LTDSEEQTDG SSHVYEQGKT QEASGVNLSN  420
TVMKPEMSSN SFVMPYTSED KGKFGPNALH EVKNSRNSVH PVLLPGQSYQ VGENMIVSSE  480
PSFFTSSNQS RPRNQKEAAS STDTPSMEFP HNLSTAALVK LASQMKNSST SSMFKFENES  540
AKSELHSEVV PSDPSSALPM FSAKPNPDRY HAPGDSVELC TSGNFMMPLV NAPRLDEQKT  600
KVPLEKLNLS AVNPGAGEKN EVGGSGVMCN KDPLLKQREI CTDLEVNGNN KIVANKCDDG  660
QENKHSDNVE VHGKAEEVGG NKDDKAIRLF KNALIEFVKE ILKPTWKEGR MSREVHKTIV  720
KKVVDKVTST IQGEHIPKTQ EKIEQYLSYS KPKLSKLVQA YVERCLKAPD A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	98	RDRSRSRGR
2	124	132	RDRSRSRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-12	C3H family protein