PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174477.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HSF

Protein Properties

Length: 384aa MW: 42540.8 Da PI: 8.2425

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174477.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.5	7e-36	25	117	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fk+g+k+ll++ XP_019174477.1 25 FLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGEKHLLCE 110 9***************************************************************99.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+r+k++ XP_019174477.1 111 IHRRKTA 117 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDTT FVVWRPPEFA 60 RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KRGEKHLLCE IHRRKTAQPP 120 PPSPVGHHQQ HFNYPITSSP PFFQYPSRLS ISPPDSDEQL TTPYTNNNNT KNSSWCDSPI 180 SVTFSAASAG AGGGGCFGGG SVTALSEDNE RLRRSNNMLM SELAHMRKLY NDIIYFVQNH 240 VKPVTPSNSY PSSLLQPPSA AAAAAANPII SSSSPMAQKP LSQLITYHHH HQQPTNPKRQ 300 GGSLINLTSQ TPQIVEVAAA GESDLGRTKL FGVPLQSKKR LHPDNQYPSS TPPSSMEITN 360 HKARVLALEK DDLGLNLKPP SSCS

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KRGEKHLLCE IHRRKTAQPP  120
PPSPVGHHQQ HFNYPITSSP PFFQYPSRLS ISPPDSDEQL TTPYTNNNNT KNSSWCDSPI  180
SVTFSAASAG AGGGGCFGGG SVTALSEDNE RLRRSNNMLM SELAHMRKLY NDIIYFVQNH  240
VKPVTPSNSY PSSLLQPPSA AAAAAANPII SSSSPMAQKP LSQLITYHHH HQQPTNPKRQ  300
GGSLINLTSQ TPQIVEVAAA GESDLGRTKL FGVPLQSKKR LHPDNQYPSS TPPSSMEITN  360
HKARVLALEK DDLGLNLKPP SSCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	6e-93	HSF family protein