PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174612.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 1133aa MW: 126555 Da PI: 8.8846

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174612.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.8	1e-07	45	78	3	38
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 W +eE +++da +++G++ Wk++a+ + +R+ XP_019174612.1 45 QWNKEELGRFYDAYRKYGKD-WKKVAAAVR-NRSVD 78 6***************99.*******.99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 1133 aa Download sequence
MSPARKSRSV NKRYSCVNEV SPNKDGDMSK RSNQRKRKLS MLGPQWNKEE LGRFYDAYRK 60 YGKDWKKVAA AVRNRSVDMV EALYTMNRAY LSLPEGTASV VGLIAMMTDH YCNLAGSDSE 120 QESNEGAGTS QKPQKRARGK VQAGTSKGSD LQPPTVAPNY GCLSLLKKKR SGGTRPRVVG 180 KRTPRFPVSY SYENFNSGKY FSSSKQGLKR KLDVNDDEVA HEIALALAEA SQRGGSPQVS 240 QTPTRRTDSA LSTPARNAEK KHVNLEMANS KLLSSEMDED EGSMEADTGE VSRNRTLMET 300 GRTMQKGRRL SGRKLEIDDT GDNHFDDIKE ACSGTEEGYR LGAVRGKHDK EVAGERVSRA 360 SSLGLRKRSK KVLFQRDESS AFDALQTLAD LSLMMPATEN ENDLMMQVKD ENDHIDESGT 420 LEALPTNRQR EKRGSSGVKT KWSQPASRLE VASSTMPKHG KASVDTSSVP ETKQTKKTQK 480 ILTSKARKGE AHLTNDISEP QDFETKDAPK KPSSKGKRSL QSSSPKLIKN QDHSSSADLR 540 IERSDSAQSI AEVPVANQVT LPTKVRSRRK MGIKKPQKEK DLTFPDSILD NHCNLPFAPV 600 NDKLFNLKKK LSSCLSNDRV RRWCIYEWFY SAIDYPWFAK REFVEYLYHV GLGHVPRLTR 660 VEWDVIRSSL GKPRRFSEQF LKEEKEKLSQ YREFVRTHYT ELREGTREGL PTDLARPICV 720 GQRVIAIHPK TREVHDGSVL TVDYSRCRVQ FDRPELGVEF VNDIDCMPLN PNENMPTLLR 780 RNGHHVDKLF ENFNEHKVNE QANDSVKYAS RDNLENGDGF PCLPSSTYAK NNLLMQTEVD 840 SANVDGHAKI GSSEIAQQMS HSQPGTVGQN QAKEADVQAL AKLTRALDKK EAVISELRRM 900 NDDVLENQKS GDCTLKDSEP FKKQYAAVIV QLNEVNDQVS SALYCLRQRN TYQGSISLNW 960 PRPVANFGDS GGIVSTFDCY TNQTQEPGSH INEIIESSKI KARTMVDAAV QAMSSLNGVE 1020 NSTGDVEDAI DYLNNRIPLD ESCLLTIPDS KLKNPVHGNE ADIPSELITQ CVATLLMIQK 1080 CTERQFPPAD VAKILDSAVA SLQPSGSHNL PLYAEIEKCM GIIRTQILAL IPT

Sequence ? help Back to Top

Protein Sequence Length: 1133 aa Download sequence

MSPARKSRSV NKRYSCVNEV SPNKDGDMSK RSNQRKRKLS MLGPQWNKEE LGRFYDAYRK  60
YGKDWKKVAA AVRNRSVDMV EALYTMNRAY LSLPEGTASV VGLIAMMTDH YCNLAGSDSE  120
QESNEGAGTS QKPQKRARGK VQAGTSKGSD LQPPTVAPNY GCLSLLKKKR SGGTRPRVVG  180
KRTPRFPVSY SYENFNSGKY FSSSKQGLKR KLDVNDDEVA HEIALALAEA SQRGGSPQVS  240
QTPTRRTDSA LSTPARNAEK KHVNLEMANS KLLSSEMDED EGSMEADTGE VSRNRTLMET  300
GRTMQKGRRL SGRKLEIDDT GDNHFDDIKE ACSGTEEGYR LGAVRGKHDK EVAGERVSRA  360
SSLGLRKRSK KVLFQRDESS AFDALQTLAD LSLMMPATEN ENDLMMQVKD ENDHIDESGT  420
LEALPTNRQR EKRGSSGVKT KWSQPASRLE VASSTMPKHG KASVDTSSVP ETKQTKKTQK  480
ILTSKARKGE AHLTNDISEP QDFETKDAPK KPSSKGKRSL QSSSPKLIKN QDHSSSADLR  540
IERSDSAQSI AEVPVANQVT LPTKVRSRRK MGIKKPQKEK DLTFPDSILD NHCNLPFAPV  600
NDKLFNLKKK LSSCLSNDRV RRWCIYEWFY SAIDYPWFAK REFVEYLYHV GLGHVPRLTR  660
VEWDVIRSSL GKPRRFSEQF LKEEKEKLSQ YREFVRTHYT ELREGTREGL PTDLARPICV  720
GQRVIAIHPK TREVHDGSVL TVDYSRCRVQ FDRPELGVEF VNDIDCMPLN PNENMPTLLR  780
RNGHHVDKLF ENFNEHKVNE QANDSVKYAS RDNLENGDGF PCLPSSTYAK NNLLMQTEVD  840
SANVDGHAKI GSSEIAQQMS HSQPGTVGQN QAKEADVQAL AKLTRALDKK EAVISELRRM  900
NDDVLENQKS GDCTLKDSEP FKKQYAAVIV QLNEVNDQVS SALYCLRQRN TYQGSISLNW  960
PRPVANFGDS GGIVSTFDCY TNQTQEPGSH INEIIESSKI KARTMVDAAV QAMSSLNGVE  1020
NSTGDVEDAI DYLNNRIPLD ESCLLTIPDS KLKNPVHGNE ADIPSELITQ CVATLLMIQK  1080
CTERQFPPAD VAKILDSAVA SLQPSGSHNL PLYAEIEKCM GIIRTQILAL IPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	MYB_related family protein