PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174694.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 297aa MW: 32424 Da PI: 9.9951

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174694.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.3	8.2e-19	14	59	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEdell ++v+++G ++W++I++ + gR++k+c++rw + XP_019174694.1 14 KGPWSPEEDELLQKLVEKYGARNWSLISKSIC-GRSGKSCRLRWCNQ 59 79****************************.*********985 PP
2	Myb_DNA-binding	50.5	4.8e-16	68	110	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde++++ + ++G++ W+tIar + gRt++ +k++w++ XP_019174694.1 68 AFTAEEDEIIIRSHSKFGNK-WATIARLLH-GRTDNAIKNHWNST 110 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MATSARRKVT DRIKGPWSPE EDELLQKLVE KYGARNWSLI SKSICGRSGK SCRLRWCNQL 60 SPQVEHRAFT AEEDEIIIRS HSKFGNKWAT IARLLHGRTD NAIKNHWNST LKRKCVSKAK 120 SFVKPPQQPQ PVKGSSGLFS APDSPPGSDL SSSSLSGGVP PHVYRPVARA AGVVPPPETV 180 SSATNPITSL SLCVPGSDCS EIPHSVSQPS PAPVSLPQMA PPVSSFLPQT YGSFQFGSPP 240 TAEKRLFSPE FLAMLQDVIR KEVRDYMSGI EHGRLCFQTE AVQNAIVNRI GITKIDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	1e-65	MYB family protein