PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174776.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRF

Protein Properties

Length: 536aa MW: 57407.7 Da PI: 8.2991

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174776.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.3	1.5e-24	196	240	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_019174776.1 196 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 240 79****************************************985 PP
2	QLQ	62	1.6e-21	128	164	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+Pp+Ll +i+k XP_019174776.1 128 GPFTPSQWMELEHQALIYKYITANVPIPPYLLNPIRK 164 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence
MDFGGVLGGL DTGVLPATAS VFSAVSDVET KLKWCGSGGF LKQERPPPPA VAGEDDWRET 60 KFAKTSTAAI LRSNANGVSE SGQQMLSFSS ANSQTLPLPS YHAAFSRNSG YGGLNSGNMH 120 GLVSGVRGPF TPSQWMELEH QALIYKYITA NVPIPPYLLN PIRKAFDSAA LSAYSGLRPN 180 SFGWGAFHLG FSNTTDPEPG RCRRTDGKKW RCSRDAVADQ KYCERHMNRG RHRSRKPVEG 240 QAGTTAAATT KLMPPATSSA SAAVVVPGGS VSDTIGFSNH NNLQPFSTNP SPPSHLYRSF 300 LDKGNQGEKE SQQHSIIKDQ HHPYEASSRS GFGLVCSNPL LNPLSKGGSS SYSTTHEDVS 360 DRESKTRHSL HQFMDDWPKN QPDIDLQSDQ TRLSISIPMS TSDFMSSTSS PVSEKLAASP 420 LKLSWEHETT TQMGLGVGAV INQRQGNWIP IAWESSSVGG PLGEVFHSTN SKSSGDCKNA 480 SAPLNLMEGW DGSPRMASSP TGVLQKAAFC SHSNSSAGSS PRAENNSVMN PSLQAL

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence

MDFGGVLGGL DTGVLPATAS VFSAVSDVET KLKWCGSGGF LKQERPPPPA VAGEDDWRET  60
KFAKTSTAAI LRSNANGVSE SGQQMLSFSS ANSQTLPLPS YHAAFSRNSG YGGLNSGNMH  120
GLVSGVRGPF TPSQWMELEH QALIYKYITA NVPIPPYLLN PIRKAFDSAA LSAYSGLRPN  180
SFGWGAFHLG FSNTTDPEPG RCRRTDGKKW RCSRDAVADQ KYCERHMNRG RHRSRKPVEG  240
QAGTTAAATT KLMPPATSSA SAAVVVPGGS VSDTIGFSNH NNLQPFSTNP SPPSHLYRSF  300
LDKGNQGEKE SQQHSIIKDQ HHPYEASSRS GFGLVCSNPL LNPLSKGGSS SYSTTHEDVS  360
DRESKTRHSL HQFMDDWPKN QPDIDLQSDQ TRLSISIPMS TSDFMSSTSS PVSEKLAASP  420
LKLSWEHETT TQMGLGVGAV INQRQGNWIP IAWESSSVGG PLGEVFHSTN SKSSGDCKNA  480
SAPLNLMEGW DGSPRMASSP TGVLQKAAFC SHSNSSAGSS PRAENNSVMN PSLQAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	6e-91	GRF family protein