PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174885.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 375aa MW: 41173.9 Da PI: 6.6485

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174885.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.6	3.1e-10	222	270	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+el+P + +k Ka +L + ++Y++sLq XP_019174885.1 222 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 270 58************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MGTEDNNGDM GLQQHRANVS ISMAMSSESS FRSPPTGMDS LSFCASGWDP MVPVNQSLHY 60 PVAIDNQPMS STSHLVHYPS GPAFGNEGFS EMVSSFGLPD CRLNYMHNIG VATNRPFSRG 120 QHSQEDCLNL EEATMGKKRR SSEALSPSIA SKNVEREQPK DPLGDNSECS KEDEKKHKTE 180 QNNSSSLRSK QAGKQVKDTS SSGEPPKENY VHVRAKRGQA TNSHSLAERV RRERISERMR 240 LLQELVPGCN KITGKAVMLD EIINYVQSLQ QQVEFLSMKL ATVNPELNFD IERILSKDIL 300 HAQGNNGALL GLGPGLNSPH PFPGAPLGTF NNVPNATPFH SLPQNVWEND LQSILQMGFD 360 SNSSLNNMGP NGNRS

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MGTEDNNGDM GLQQHRANVS ISMAMSSESS FRSPPTGMDS LSFCASGWDP MVPVNQSLHY  60
PVAIDNQPMS STSHLVHYPS GPAFGNEGFS EMVSSFGLPD CRLNYMHNIG VATNRPFSRG  120
QHSQEDCLNL EEATMGKKRR SSEALSPSIA SKNVEREQPK DPLGDNSECS KEDEKKHKTE  180
QNNSSSLRSK QAGKQVKDTS SSGEPPKENY VHVRAKRGQA TNSHSLAERV RRERISERMR  240
LLQELVPGCN KITGKAVMLD EIINYVQSLQ QQVEFLSMKL ATVNPELNFD IERILSKDIL  300
HAQGNNGALL GLGPGLNSPH PFPGAPLGTF NNVPNATPFH SLPQNVWEND LQSILQMGFD  360
SNSSLNNMGP NGNRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	178	KKRRSSEALSPSIASKNVEREQPKDPLGDNSECSKEDEKKHK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	9e-62	bHLH family protein