PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019174984.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 229aa    MW: 25997.9 Da    PI: 10.1153
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019174984.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.71e-18125212196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+  ++ps+v+   +l lp  f++++   ++++ t+tl desg +W   +  rk++    l++GWk+F+ +++L +gD +vF+l++r  f  +v 
  XP_019174984.1 125 FVRSMLPSHVSGGFWLGLPSYFCRRNL--PARDETVTLIDESGAEWPTVYLARKTG----LSGGWKKFAVDHDLVDGDALVFQLIKRAVF--KVY 211
                     778899*****************9995..456779***************656665....*************************98888..554 PP

                     E CS
              B3  96 v 96 
                     +
  XP_019174984.1 212 I 212
                     4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MVMSKVKYEE LRQQRVEENK RRLEELHLPL LSLALKNASP KPSPKVKPRV IRTELVPLRR  60
SPRVAKSAAP EYAEVTYYER ILPRRASCPR RDLSNRVYAS DKDRAVATVK AEKLEASLES  120
KVPTFVRSML PSHVSGGFWL GLPSYFCRRN LPARDETVTL IDESGAEWPT VYLARKTGLS  180
GGWKKFAVDH DLVDGDALVF QLIKRAVFKV YITRLNNLAD DDGSETSND
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-57B3 family protein