PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174999.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 790aa MW: 89712.8 Da PI: 6.3198

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174999.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55	2.6e-17	128	214	3	91
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvC.skegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Yn+YA ++GFs rk k+++ + ++i k + +C sk+g+r ++ ++ ++ +tr gC+a+ + +++gkw++tk ++eHnHel+p XP_019174999.1 128 YNDYAFRMGFSGRKGKQYYV-TGTRILKTKVCCySKSGFRIIPDNP--NKCYSKIVTRSGCNAMCQFDIDSNGKWVITKHVKEHNHELCP 214 9****************9.5666999999994578999988877..88999*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 790 aa Download sequence
MNEIVVTNRI EEIDSNSMIV DENSSVFVGK DDIPVAGECI SPIAFDVPCT NFVDDNEYIP 60 DDFDNSIAVD GTSEHVIVEE SAIPDDFDNS IAVDGTSEHV IVEESAIPDN EELLGLSVGS 120 IEDAFGKYND YAFRMGFSGR KGKQYYVTGT RILKTKVCCY SKSGFRIIPD NPNKCYSKIV 180 TRSGCNAMCQ FDIDSNGKWV ITKHVKEHNH ELCPASSSYM LRSHRKVSEN QLTCLKNMKR 240 SGVPLSDGIR FLKCQSGGSP FVGFTPRDAY NMISLDSAKH LDDTDSNSLI EIFRRRQMDE 300 SDFYFEFELD EDARLCNFFW RDGQMKADYD LFGDLVVHDT TYRTNRYDMI CAPFVGMNHH 360 CMNVMFGCGF LLNERIESFV WLFKVFVRSM GGKHPQTIMT DQCAAMAAGI AQVFSNSNHR 420 LCIWHIGENS KKHIKSLRNK KGFLELFNFL LKYTDTEAEF EFYWTRMMTE YGCHQNVWLN 480 KLYSIREKWC PAFSKEYFSD VSEWRSRENG ENVRCSQGLA PMVMNHVKLL SHARDIYTIE 540 IYYLFEEQFL KGTSCHQESV GGSGNEIKYH VWRPDVDLIR HEVCFKVNDL DISCSCMLFS 600 EMGILCSHSL RIFNVHCVAA IPDKYIIKRW AKKGIEDRII SSDSSLNILS IASSVWVIQM 660 GRKFQQLVLS SQANCKAREV CENAFEDARR KVEGDIGPIV IEDGEERIAG VIQNPARNRA 720 KGEHNRRHIS TIEKKYNQVR GRKLGVKVAE MSTKAAVQAS VEGVVANIVG SGYFVHPSSG 780 SHELGLVKSS

Sequence ? help Back to Top

Protein Sequence Length: 790 aa Download sequence

MNEIVVTNRI EEIDSNSMIV DENSSVFVGK DDIPVAGECI SPIAFDVPCT NFVDDNEYIP  60
DDFDNSIAVD GTSEHVIVEE SAIPDDFDNS IAVDGTSEHV IVEESAIPDN EELLGLSVGS  120
IEDAFGKYND YAFRMGFSGR KGKQYYVTGT RILKTKVCCY SKSGFRIIPD NPNKCYSKIV  180
TRSGCNAMCQ FDIDSNGKWV ITKHVKEHNH ELCPASSSYM LRSHRKVSEN QLTCLKNMKR  240
SGVPLSDGIR FLKCQSGGSP FVGFTPRDAY NMISLDSAKH LDDTDSNSLI EIFRRRQMDE  300
SDFYFEFELD EDARLCNFFW RDGQMKADYD LFGDLVVHDT TYRTNRYDMI CAPFVGMNHH  360
CMNVMFGCGF LLNERIESFV WLFKVFVRSM GGKHPQTIMT DQCAAMAAGI AQVFSNSNHR  420
LCIWHIGENS KKHIKSLRNK KGFLELFNFL LKYTDTEAEF EFYWTRMMTE YGCHQNVWLN  480
KLYSIREKWC PAFSKEYFSD VSEWRSRENG ENVRCSQGLA PMVMNHVKLL SHARDIYTIE  540
IYYLFEEQFL KGTSCHQESV GGSGNEIKYH VWRPDVDLIR HEVCFKVNDL DISCSCMLFS  600
EMGILCSHSL RIFNVHCVAA IPDKYIIKRW AKKGIEDRII SSDSSLNILS IASSVWVIQM  660
GRKFQQLVLS SQANCKAREV CENAFEDARR KVEGDIGPIV IEDGEERIAG VIQNPARNRA  720
KGEHNRRHIS TIEKKYNQVR GRKLGVKVAE MSTKAAVQAS VEGVVANIVG SGYFVHPSSG  780
SHELGLVKSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-80	FAR1 family protein