PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175000.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GeBP

Protein Properties

Length: 424aa MW: 46313.8 Da PI: 8.6359

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175000.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	117.3	8.6e-37	189	285	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 lfqrlwseeDei++L+G+i ++++++++p+ d++af++f+++s++++v+++ql +KirrLKkK++++ +k k+gke +fsk h+q++++lsk iW XP_019175000.1 189 LFQRLWSEEDEIAVLKGMIAYAEEKNADPVTDLNAFHDFIRESLHIDVTRTQLQDKIRRLKKKYENNARKEKKGKERTFSKIHEQNAYDLSKNIW 283 79********************************************************************************************* PP DUF573 97 gs 98 gs XP_019175000.1 284 GS 285 95 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MAKNRPEPAK SVDTDEESEQ EEEEASSDEN GGSDSEPEPP LTQVSRTPVT KKPSASAPKK 60 PEPKRVSSSE ESDSESDGDS DSNPNVKPIA SKPMDDPKAP SAAATPTKKP RSKPAAPRPT 120 SPTKSAAGTK RPAADGEAKE SKKSKKKPSG EVESSGVKKS MTEDSKKKPT VEVENSAKKS 180 LTEDSKKQLF QRLWSEEDEI AVLKGMIAYA EEKNADPVTD LNAFHDFIRE SLHIDVTRTQ 240 LQDKIRRLKK KYENNARKEK KGKERTFSKI HEQNAYDLSK NIWGSLKAQN GSVVKAAETS 300 KASNASARKD RIKNAVIPVK ASTVAAAEVV DHVLDEEKEA NANMDVDTNV EGSKSLNLSG 360 GSLFGKSLNE LAEWIDKNKV GLSEEKLIEM EGKWKALKVA ELELFLKKAA LIQEQGRLVL 420 DALK

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MAKNRPEPAK SVDTDEESEQ EEEEASSDEN GGSDSEPEPP LTQVSRTPVT KKPSASAPKK  60
PEPKRVSSSE ESDSESDGDS DSNPNVKPIA SKPMDDPKAP SAAATPTKKP RSKPAAPRPT  120
SPTKSAAGTK RPAADGEAKE SKKSKKKPSG EVESSGVKKS MTEDSKKKPT VEVENSAKKS  180
LTEDSKKQLF QRLWSEEDEI AVLKGMIAYA EEKNADPVTD LNAFHDFIRE SLHIDVTRTQ  240
LQDKIRRLKK KYENNARKEK KGKERTFSKI HEQNAYDLSK NIWGSLKAQN GSVVKAAETS  300
KASNASARKD RIKNAVIPVK ASTVAAAEVV DHVLDEEKEA NANMDVDTNV EGSKSLNLSG  360
GSLFGKSLNE LAEWIDKNKV GLSEEKLIEM EGKWKALKVA ELELFLKKAA LIQEQGRLVL  420
DALK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G11510.1	2e-25	GeBP family protein