PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019175013.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25396.2 Da    PI: 9.4028
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019175013.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.61e-25959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n   rqvtfskRr g++KKAeEL vLCda+va+i+fs tgkl++++s
  XP_019175013.1  9 KKIDNIAARQVTFSKRRRGLFKKAEELAVLCDADVALIVFSATGKLFDFAS 59
                    689*********************************************986 PP
2K-box55.42.6e-19851701799
           K-box  17 lqqela...kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     lqqe +   +L kei+   re+R++ Ge+Le Lsl+eL++Le++L+ +l+++ ++K+e l+++i +lq k  el een++L+++++
  XP_019175013.1  85 LQQENSlqvRLSKEISDKTRELRRMGGEELEGLSLEELEELEKKLKVGLNRVSETKDEQLRNEIATLQYKGSELMEENNQLKQRVA 170
                     5555432238999999999***************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MTRKKIKIKK IDNIAARQVT FSKRRRGLFK KAEELAVLCD ADVALIVFSA TGKLFDFASS  60
SMKHILQKYV SHSSNIEKYP PLQFLQQENS LQVRLSKEIS DKTRELRRMG GEELEGLSLE  120
ELEELEKKLK VGLNRVSETK DEQLRNEIAT LQYKGSELME ENNQLKQRVA NDRRNGRIVG  180
DIMDRMIQED GESITKNSTT QPPLLQAADC SDTMLKLGLP FH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-51MIKC_MADS family protein