PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019175024.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 225aa    MW: 25290.8 Da    PI: 5.4809
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019175024.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.4e-105599655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     ++ErrRR+++ +++ eLr+l+P+      + ++K +i + A+ YI +Lq
  XP_019175024.1 55 LQAERRRREKLSQRLLELRSLVPNI-----TNMTKETIITDAISYIEELQ 99
                    579*********************6.....58*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MIADTLKREF PVEAFVDLCS TEESERKGGG GRMERKKKCV VEVQDDCREF KSKNLQAERR  60
RREKLSQRLL ELRSLVPNIT NMTKETIITD AISYIEELQN NVKELSNQLL EMEATSGVEG  120
KAQITGDHNT DSAAEDMKKF GIEAEVQVAQ IDQNKLWIKV ICQNRKGAFT KLMEAMNVLG  180
VHLYDTSATT SKGALLVTST LELNQSGAAE AHQAQQFLQE IIKNI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15863ERRRRE
25964RRRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.13e-47bHLH family protein