PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019175025.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 273aa    MW: 30747.1 Da    PI: 8.4167
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019175025.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.75.1e-1445134199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv+     + + rl lp   +++ g+kk+e  +++l+  ++ s++vk+  ++k++r  +t+GW +Fv +ng+  gDf vF++++  +f++ v 
  XP_019175025.1  45 FFKVM--RPGF-HTRLNLPPILCKKLGEKKPE--EVVLTG-QNGSFKVKI-QEGKDQRLCFTEGWDDFVGQNGISLGDFAVFEHMD--SFHFSVV 130
                     66766..3344.45799*********988655..788777.5669*****.5888889*************************765..7777888 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f++
  XP_019175025.1 131 LFDQ 134
                     8875 PP
2B343.46.2e-141762571087
                     HHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3  10 vlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                     + +s    + +p+kf++++++    s+ +tl+ + g+ W  kl+     k+sg    + +GWkeF+   +Lke+D++ F+++ r
  XP_019175025.1 176 NVRSraPYMHIPRKFCTSNNLL--MSTSITLRGPCGKLWPAKLRTyvyGKTSGDyACIYDGWKEFATHYDLKERDVCSFRFVPR 257
                     4444334589*********887..5668***************6657766666668899*********************8755 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MGDDPKQDLG QEVNEQTPSD GAGTSRKRPV TSKFLSSNLP IGWRFFKVMR PGFHTRLNLP  60
PILCKKLGEK KPEEVVLTGQ NGSFKVKIQE GKDQRLCFTE GWDDFVGQNG ISLGDFAVFE  120
HMDSFHFSVV LFDQTCCQKN VHVNPETSSN DSEGGKSLCT GQENSSCFTT TIKAYNVRSR  180
APYMHIPRKF CTSNNLLMST SITLRGPCGK LWPAKLRTYV YGKTSGDYAC IYDGWKEFAT  240
HYDLKERDVC SFRFVPRPTS YCLMVDVKII PAC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.13e-16B3 family protein